PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Home  BLAST  Prediction  RegMap  ATRM  Download  Help  About  Links
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_022087-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 397aa    MW: 45313.2 Da    PI: 6.2441
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_022087-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11202253155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +r+ah ++Er+RR+++N+ ++ L++ +P++     ++ + a+i   A +++k+L+
  NNU_022087-RA 202 QRMAHIAVERNRRKQMNDHLSALKSFMPSS---FIQRGDQASIIGGAFDFVKELE 253
                    79***************************9...99***************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.02E-10200257No hitNo description
SuperFamilySSF474596.94E-15200268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.018201252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-13202267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-9202253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-8207258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEELQEPINP CLLGVGEHLN AELLEQGVDA LHITCGPSSI SLENLRLEQE RQTLAMPRLE  60
LKMPFLQMLQ DVETPSFAES SFQLLLRLQQ QQRQKPWERN NWIEMESHVQ TLEQESCITY  120
DLSEAHSPVK SETKAPHHPQ SSSCLEVVVS SACNGEHNSP EKCRGGNSSC PRFTKPATAV  180
TRERRKRKRE KQSKNKEEVE NQRMAHIAVE RNRRKQMNDH LSALKSFMPS SFIQRGDQAS  240
IIGGAFDFVK ELEQLLQSLQ AQKRMKKSEE EDDDVNDKTG RRERESSLPW STHWEERGKS  300
KEELREENKS TVADIEVVVM EAHVNLKILS PRRPGQLLKT IAALEDLRLA ILHLSIHSSQ  360
GSVLYSFNLK MEDDCKLGSA DEIATAVHQV FNLINDH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183188RRKRKR
2184190RKRKREK
3184191RKRKREKQ
4202213RMAHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241047.10.0PREDICTED: transcription factor bHLH57 isoform X1
TrEMBLA0A061DS781e-123A0A061DS78_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
TrEMBLA5C9J31e-121A5C9J3_VITVI; Putative uncharacterized protein
STRINGVIT_15s0048g02510.t011e-117(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.17e-65bHLH family protein